Index

_

__call__() (mona.Rule method) (mona.sci.aims.Aims method)

A

abc (mona.sci.geomlib.Crystal attribute) active() (mona.Session class method) add_extra_arg() (mona.Rule method) add_side_effect_of() (mona.Session method)

Aims (class in mona.sci.aims) all_tasks() (mona.Session method) Atom (class in mona.sci.geomlib) Atoms (class in mona.sci.aims)

B

bondmatrix() (mona.sci.geomlib.Molecule method)

C

Cache (class in mona.plugins) centered() (mona.sci.geomlib.Molecule method) centers (mona.sci.geomlib.Molecule attribute) cms (mona.sci.geomlib.Molecule attribute) content (mona.files.File attribute) Control (class in mona.sci.aims) coords (mona.sci.geomlib.Molecule attribute)

copy() (mona.sci.geomlib.Atom method) (mona.sci.geomlib.Crystal method) (mona.sci.geomlib.Molecule method) corofunc (mona.Rule attribute) covalent_radius (mona.sci.geomlib.Atom attribute) create_task() (mona.Session method) Crystal (class in mona.sci.geomlib)

D

db (mona.plugins.Cache attribute) dir_task() (in module mona.dirtask) directory task DirtaskTmpdir (class in mona.dirtask)

dot_graph() (mona.Session method) dump() (mona.sci.geomlib.Crystal method) (mona.sci.geomlib.Molecule method) dumps() (mona.sci.geomlib.Molecule method)

E

eval() (mona.Session method)

eval_async() (mona.Session method)

F

File (class in mona.files) FileManager (class in mona.plugins) formula (mona.sci.geomlib.Molecule attribute) from_coords() (mona.sci.geomlib.Crystal class method) (mona.sci.geomlib.Molecule class method)

from_path() (mona.files.File class method) (mona.plugins.Cache class method) from_str() (mona.files.File class method) Future (class in mona.futures)

G

Geom (class in mona.sci.aims) get_fragments() (mona.sci.geomlib.Molecule method)

get_kgrid() (mona.sci.geomlib.Crystal method) ghost() (mona.sci.geomlib.Molecule method)

H

has_tmpdir_manager() (mona.dirtask.DirtaskTmpdir method)

hash() (mona.sci.geomlib.Molecule method) HashedComposite (class in mona.hashing)

I

inertia (mona.sci.geomlib.Molecule attribute)

items() (mona.sci.geomlib.Molecule method)

J

jinja_tex() (in module mona.sci.tex)

L

load() (in module mona.sci.geomlib)

loads() (in module mona.sci.geomlib)

M

mass (mona.sci.geomlib.Atom attribute) (mona.sci.geomlib.Molecule attribute) Molecule (class in mona.sci.geomlib) mona (module) mona.dirtask (module)

mona.files (module) mona.plugins (module) mona.sci.aims (module) mona.sci.geomlib (module) mona.sci.tex (module)

N

name (mona.files.File attribute) normalized() (mona.sci.geomlib.Crystal method)

number (mona.sci.geomlib.Atom attribute) numbers (mona.sci.geomlib.Molecule attribute)

P

Parallel (class in mona.plugins) parse_aims() (in module mona.sci.aims)

path (mona.files.File attribute) plugin_factories (mona.sci.aims.Aims attribute)

R

read_bytes() (mona.files.File method) read_text() (mona.files.File method) readfile() (in module mona.sci.geomlib) register_task() (mona.Session method) result() (mona.dirtask.DirtaskTmpdir method) rotated() (mona.sci.geomlib.Crystal method) (mona.sci.geomlib.Molecule method)

rule Rule (class in mona) run_process() (in module mona) run_shell() (in module mona) run_task() (mona.Session method) run_task_async() (mona.Session method) run_thread() (in module mona) running_task (mona.Session attribute)

S

Script (class in mona.sci.aims) Session (class in mona) set_result() (mona.Session method) shifted() (mona.sci.geomlib.Molecule method) side_effects_of() (mona.Session method)

species (mona.sci.geomlib.Molecule attribute) SpeciesDefaults (class in mona.sci.aims) stem (mona.files.File attribute) storage (mona.Session attribute) supercell() (mona.sci.geomlib.Crystal method)

T

target_in() (mona.files.File method) task Task (class in mona.tasks)

task factory TaskComponent (class in mona.tasks) TaskComposite (class in mona.tasks) TmpdirManager (class in mona.plugins)

W

write() (mona.sci.geomlib.Molecule method)

X

xyz (mona.sci.geomlib.Molecule attribute)